rs46111521 SNP Detail

Summary

• ID
  rs46111521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:58319620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTGAAAA CAAACTGCCC
  AAGTACAAAA ATACCTTGTG GGTCTTGAAA TCAATATCAT TCAACAGCAG ATCTGAAACA
  GCCGTGGTGT TTGCTTTGTC CAATGCTGGG TGTTTGTAGA CCCCTGCTGC CTGGTTTCTA
  TGGCTCCTTT TCTTCTTGGC CTTTCTCCAC AGGCTTCTGA ATATCCAATT GTAGACTAAG
  Y
  TGATCTTGGT TCAGGAAAAG GCAGGCTGCA GAGCCCAGAG CTAGCAGCTC AGCTCCATAG
  CTTGATCAAG TTCCTGCAGA GTGCATTCTT TTGCCAAAGC TGGTTCCCAC CAGTAGGTAC
  TTACATTACA TCACCCTTTT CTAATATCTG GATTCATTTA TTTATATTCT ATCTCATTTG
  CCCCTCCTCC CTGGAGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60471652	NES16460354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46111521					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60471652	NES16460354	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:58319620 () rs orientation: forward

Symbol	Name	Function Class
Rr404899	regulatory region 404899	560 bp downstream
Rr517409	regulatory region 517409	within coordinates
St3gal6	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	within coordinates
Tssr4919	transcription start site region 4919	590 bp downstream
Tssr4920	transcription start site region 4920	616 bp downstream
Tssr138857	transcription start site region 138857	538 bp downstream
Tssr141615	transcription start site region 141615	76 bp downstream
Tssr141616	transcription start site region 141616	92 bp downstream
Tssr141617	transcription start site region 141617	125 bp downstream
Tssr141618	transcription start site region 141618	562 bp downstream