rs46112254 SNP Detail

Summary

• ID
  rs46112254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156765811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA ATTACTATGC CAGAATTTAA
  R
  CTCAAATAAC TATACTTAAA CCATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145809563	ENSMUSSNP3991705	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46112254					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156765811 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	553 bp upstream
Cpgi904	CpG island 904	469 bp proximal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr28786	regulatory region 28786	within coordinates
Rr367037	regulatory region 367037	571 bp upstream
Tssr9581	transcription start site region 9581	1416 bp upstream
Tssr14474	transcription start site region 14474	399 bp upstream
Tssr14475	transcription start site region 14475	541 bp downstream
Tssr14476	transcription start site region 14476	570 bp downstream
Tssr14477	transcription start site region 14477	1292 bp downstream
Tssr14478	transcription start site region 14478	1312 bp downstream
Tssr14479	transcription start site region 14479	1387 bp downstream
Tssr14480	transcription start site region 14480	1785 bp downstream