rs46113177 SNP Detail

Summary

• ID
  rs46113177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134653825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT GTACTTACTC AAAATGAGGT
  R
  TATCTACAAC AGGAGTCGGG TATTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss147538855	ENSMUSSNP1925707	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321350002	CHEV_4_134482429	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46113177					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134653825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15053	CpG island 15053	1850 bp distal
Rr601869	regulatory region 601869	232 bp distal
Rr601870	regulatory region 601870	1715 bp proximal
Rsrp1	arginine/serine rich protein 1	within coordinates
Tssr39591	transcription start site region 39591	1047 bp downstream
Tssr39592	transcription start site region 39592	441 bp downstream
Tssr39593	transcription start site region 39593	76 bp upstream
Tssr39594	transcription start site region 39594	161 bp upstream
Tssr39595	transcription start site region 39595	188 bp upstream
Tssr43947	transcription start site region 43947	854 bp downstream