rs46113939 SNP Detail

Summary

• ID
  rs46113939
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161575014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCC CTGCCAAGGC CGTGGAGGCG
  R
  CTCAGTCCCA TAAAATGGCT CCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60335756	NES15843543	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	A	G	A	G	G	A	G
ss145921163	ENSMUSSNP7158713	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46113939					SNP	G	G	G	A	G	G	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335756	NES15843543	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161575014 () rs orientation: forward

Symbol	Name	Function Class
Gm5049	predicted gene 5049	within coordinates
Gm70711	predicted gene, 70711	920 bp upstream
Rr396465	regulatory region 396465	779 bp upstream
Rr421832	regulatory region 421832	737 bp proximal
Rr421833	regulatory region 421833	1321 bp proximal
Tssr9696	transcription start site region 9696	95 bp upstream