rs46114535 SNP Detail

Summary

• ID
  rs46114535
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31651080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCCTGCACAT GTCATAATAA AATGAGATAT CTATGTATAG
  ATATATACAA ACTTTTTGTT CTTTAAGAGT TTTATCCACG GGGGCTGGTG AGATGGCTCA
  G
  CGGGTAAAAG CACCCGACTA CTCTTCCGAA AGTCCGGAGT TCAAATCCCA GCAACCACAT
  GGTGGCTCAC AACCACCCAT AATGAGATCT GACTCCCTCT T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148193004	ENSMUSSNP3625484	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs46114535					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31651080 () rs orientation: forward

Symbol	Name	Function Class
4930566F21Rik	RIKEN cDNA 4930566F21 gene	within coordinates
Cpgi15713	CpG island 15713	738 bp proximal
Gpn1	GPN-loop GTPase 1	1005 bp upstream
Rr399021	regulatory region 399021	717 bp upstream
Rr609208	regulatory region 609208	515 bp proximal
Rr609209	regulatory region 609209	1409 bp proximal
Tssr1449	transcription start site region 1449	1063 bp upstream
Tssr45712	transcription start site region 45712	1000 bp upstream