rs46115377 SNP Detail

Summary

• ID
  rs46115377
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:65207151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCAAGAT CTGACACCTT
  CACACAGACA TGCATACAGC CAAAACACCA ATGCACATAA AATGGAAATA AGTTAATTTA
  AAAACATTTC CCTTTACCAT CTCTTCTTGC CTCCACTTCA CCTTCTATAC TTAAATTATG
  CTGAGGTTAG AGCAGTAACA ATTTCCAAAT TATAATTGGC CTTTTCAAGA CAAAAGCATG
  M
  TATTAAGCCC CTGTAAGCAG TCTGGGGCCG TGATTCCTAC TAGTACAAGC AGCATCAAAG
  ACTAGAATAT AGTCCTCAAA AGTTATCTGC TTTACTCGCA TTTTGGATTA ACAATACATT
  CCACCCCACT GTGTACCAGA GAATGCCAAG GTCCTAAGTG GCTGACCTCA GGTGGTTCTG
  ACTAAGGGCA TGAACAAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52441739	NES15414780	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46115377					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52441739	NES15414780	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65207151 () rs orientation: forward

Symbol	Name	Function Class
Mis18bp1	MIS18 binding protein 1	within coordinates
Tssr116466	transcription start site region 116466	1172 bp upstream