rs46115831 SNP Detail

Summary

• ID
  rs46115831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61759654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCTTTC CATGTGGTCC
  TGGCTGTCCT GGAACTCTCT CTGTAGAGCA GGCTAGCCTC TAACTTGGAG ATCCACCTGC
  CTCTGCCTTC AGAGTGCTGG GTTTAAAGGC GTGCACCACC ACAGCCTGGC CTGGCTTGCA
  AGTCTTAGCC AGTCTTACTT TTTAAGCTTT AAACTCTACA CTGCCTAGCT TGGCTTTGAA
  Y
  CTGGCCTCTA TGAATCTAGT GCTTTCCATG CTGGAATCAG GAGGTCCTTA AGGGTGGAAG
  GTTCTGCCCT CTCCAGATCT GGTCCTGGTC CTGGTCCTGG TCCTGGTCCT AGCTAGTGCA
  GAGTCACAGT ATGCTCTCAA TTCAAGGTCA CCCAAGCCAT GTTCTGAGCC TGCTTGACTG
  TTGGGCTCCA AGAAACTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61280644	NES16779777	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46115831					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280644	NES16779777	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61759654 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates
Rr223137	regulatory region 223137	1823 bp proximal