rs46117049 SNP Detail

Summary

• ID
  rs46117049
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172849608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT GGCTTTCCCT CCACTGTTCC
  T
  AATGGTTCCC TGGGGATGCC CTGGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148328086	ENSMUSSNP1817383	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320621292	CHEV_2_172833316	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46117049					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172849608 () rs orientation: forward

Symbol	Name	Function Class
Rae1	ribonucleic acid export 1	within coordinates
Rr374300	regulatory region 374300	1962 bp upstream
Tssr21992	transcription start site region 21992	1716 bp downstream