rs46118340 SNP Detail

Summary

• ID
  rs46118340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191490138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCCAGTC CATGCCCTTG
  TCCCATCTGC TTCCAGGGGT TTCCCTGTAT GTAACTGTTC CTCATGCATA CAGGTAGCTT
  GAGCATCGCA GGCTTCTGTT GGCTATTGCA GTATTTCCCC AACTTACCCC AATGGCTTTT
  TTTTTTCTCA TCACAGAAAT CAGTAAAACT TGGCTACTGT ATAGAAAAGA GTTGGGCTTA
  Y
  TTATGGTATA AGTAAAATTA TGGCATTTCC AGCAATTTTG CATTTAAGGC TTAGCCCTGG
  TAGCTGGAGA GATAGTTCAA TTCTTATCCT TAATGCTCTT TAAGAGGACG TGGAATTGGT
  TCCCTGAACT TAAATCAGAC TGCTCAAAAC TACTTATGAT TCTAGTTGTA GGAGATCCAA
  CACCCTCTGC CTCCCTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ
ss60360890	NES15859515	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ
rs46118340					SNP	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360890	NES15859515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191490138 () rs orientation: forward

Symbol	Name	Function Class
Lpgat1	lysophosphatidylglycerol acyltransferase 1	Intron
Rr426213	regulatory region 426213	970 bp distal
Rr426214	regulatory region 426214	1545 bp proximal