rs46119849 SNP Detail

Summary

• ID
  rs46119849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14929091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAATGTCA CTTAAAAGAT
  CCACCATTAA GGGCTGGAGA GATGGCTCAG CAGTTACGAG CGCTGACTGC TCTTCCAGAG
  GTCCTGAGTT CAATTCCCAG CAACCACATG GTGGCTCACA TCCATCTGTA ATGGAATCTG
  ATGGCTTCTT CTGGTGTGTC TGAAGACAGC TACAGTGTAC TCATATACAT TTAAAAAAAA
  R
  TCCACCATTA AATAAAGGCT CAGAATCGGA TTTGCATCAC ATCTTGTTTA GTTTTCCTCT
  TTGTCTGTCT CTGCTTACTT TGCACTAAAA ATATTGTTTT CTTTGTAGTT CCATTTTTCT
  TCCAGGTAAC TGAAACAACC GAAGCATTGC CTTCCCAGGA ACACTTTTGC CTAAGGCCTG
  AGTGTCAGCT GTCTTTCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321046996	CHEV_4_14856238	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs46119849					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14929091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	746 bp proximal
Gm11837	predicted gene 11837	817 bp upstream
Gm68732	predicted gene, 68732	636 bp downstream
Rr589248	regulatory region 589248	270 bp proximal
Rr589249	regulatory region 589249	771 bp proximal
Rr589250	regulatory region 589250	1359 bp proximal
Rr589251	regulatory region 589251	1596 bp proximal
Tssr36545	transcription start site region 36545	769 bp upstream
Tssr36546	transcription start site region 36546	1528 bp upstream
Tssr36547	transcription start site region 36547	1618 bp upstream