rs46119977 SNP Detail

Summary

• ID
  rs46119977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123268293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAAGGCC AGCCTGGGCT
  ATACAAGACC CCATGTCAAA GAGAGGAGTG GGGGAGGGGG AGAGAGAAGA AGAGGAAGGA
  TGGAGAGGAA TAGAATTAAA AGTGAGTAGG TAACCAGGTG TGATAATGTC TTTACTCCCC
  TCACCCAGGA GACAGAAGCA GGTGGATATC TGTGAGTTCA AGGTCCGTCT GCTTAAATAT
  Y
  GAGTTCCAAG CATCTGGGTG CTACACAGTG AGGCCCTGAC TTTAAAAGAA CAAAAGTGGC
  TAAGGTTCAG GCCTGGGGTG CAGGGAGAAC TGAGGCTAAG ACCACTGGTT TGATAAACTT
  TCAAGTGCTG TTTGACTTTT CTGTCTGTTT CTTGGACAAG ATAGAAACCG AAAAGAGAGC
  AGTAGGAACC AGGAACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137077270	ENSMUSSNP2039137	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46119977					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123268293 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	1308 bp proximal
Rr203065	regulatory region 203065	1599 bp proximal
Rr208064	regulatory region 208064	509 bp proximal