rs46120360 SNP Detail

Summary

• ID
  rs46120360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8558105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCAGCA AAATGGCAGA
  GTGGGCAAAG GTGCTGTCAC CAAGTCCTAT GACCTGAATT CCAGCAAGTT GGCCTCTGGT
  TTCCACTGTG CATGCTGCAA AAGCGCACAC ACTCAAATAA ATATATGTAC ATGTAATTTT
  TTTTTTTTTA CTTAAAGGGG GAAAAAACCC AAAGTGGATA AAGGAGAGAT GGTTCTGTAT
  Y
  TTTTATCTAA TGTGCCTGGA ACCAGAAGTG TTTCACATCT CAGTCTGGGG AATTTTTGAC
  TGTACATAAA AGGAGGTATC TTTGATAACA GAACCCAAAT CAAGGTAAAA TCCATATATT
  TCTGAGATAC CTTATACATA ATCTTATACA GAATTTTGTA TTTGACTGCA ACCCCGTACA
  AGGTCAGGTA TAAAATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147830577	ENSMUSSNP5311890	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46120360					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8558105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7942	CpG island 7942	809 bp distal
Gm59849	predicted gene, 59849	within coordinates
Rr511321	regulatory region 511321	1910 bp distal
Rr511323	regulatory region 511323	1409 bp distal
Rr511324	regulatory region 511324	969 bp proximal
Rr511325	regulatory region 511325	1046 bp proximal
Tssr139877	transcription start site region 139877	1346 bp upstream
Tssr139878	transcription start site region 139878	1289 bp upstream
Tssr139879	transcription start site region 139879	1266 bp upstream
Usp7	ubiquitin specific peptidase 7	within coordinates