rs46120782 SNP Detail

Summary

• ID
  rs46120782
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80071771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGAGTC TGAGAACACC
  AACCTGGTGA GACATTGTTT CAAAGTTCAT GGGAGGGATT GAAAGTGTGG CCTTCAGTGG
  TGGCGTTTGT CCTTGGTTTT GCAGGGAACA ATACTGACCA AAGGAGATAC TAGGATAAAA
  GTATTTACCA AACCAGAACA GATACAAAAA AGATTACATA AAACGTTGCA AAAAAGCCTG
  R
  AGGTAGTGGT GGTGCCTGCC TCTAATTCCA GCACTCCCGG AGGCAGAGGC TGGCCGATCT
  CTGTGTATTT GAGATCAGAC TGGTCTACAG GTCTACTTCT AGGACAGCCA GGCTTACACA
  GAGATGGAGA ATTCTCAGAG AGAACAACTA TGCTGCCCAA GGAAAGGAAG TTTCTCCATT
  ACAAGGGGAC TTACTTGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss132448929	ENSMUSSNP867989	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs46120782					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80071771 () rs orientation: forward

Symbol	Name	Function Class
Adap2	ArfGAP with dual PH domains 2	1987 bp downstream
D11Bhm113	DNA segment, Chr 11, Boehm 113	42 bp proximal
Rr386348	regulatory region 386348	within coordinates
Rr452448	regulatory region 452448	1094 bp distal
Rr452449	regulatory region 452449	618 bp proximal
Tssr103506	transcription start site region 103506	1771 bp downstream
Tssr103507	transcription start site region 103507	1610 bp downstream
Tssr103508	transcription start site region 103508	1577 bp downstream