rs46120883 SNP Detail

Summary

• ID
  rs46120883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44478621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTAGAA AGACCCCATC
  CTAATTAATT AATTAAAAAG TTGAAGGAAG GGAAATTCTC TGAATATTTA GTGTGTTAAA
  GTTATACTTT TGCTTTTGTT CTTCTGGTGA CAAGCGCGTG CCAGGCCATA ATTGTATTGC
  GACTTCTCTT GTATTTGTTT AAAATTGTTT ATGGTAACGA TTCTTTCTTT TTCTATTTCT
  Y
  CTTAGATCCT CACATATCTG GGTAAAAGTC CCTACAAGGG AAAATACAGA TGTTTACACC
  CTTACCCAAA TTCCTTCAGG GACATGGGGA CCCAGGCTGG GATGCCATTC AGTAGTAGGC
  CACCTGTCTG GCGGGCACAG GCTCTGGGTT CCTTTCCCAG TGCAACAAAG CCAGCCTAGC
  TGGGTGACAT TCCCCTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136397311	ENSMUSSNP5632658	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46120883					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44478621 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	1821 bp distal
Rr206319	regulatory region 206319	1420 bp distal
Tssr2844	transcription start site region 2844	461 bp downstream
Tssr89174	transcription start site region 89174	390 bp downstream
Tssr89175	transcription start site region 89175	439 bp downstream
Tssr89176	transcription start site region 89176	785 bp downstream