rs46122073 SNP Detail

Summary

• ID
  rs46122073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100824792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGCCCT TGTAGGGCAT
  CTGTACTCGT GTGCACATAC CCACATAATT TTTAAAAAAA AAAAAATTTT TTTTTAAGTG
  AAGGGGCATT GTAATGGCAG AAGGCAGCAT CAGGGGAGAA GCAGTTGGTA GTTGGTTATG
  CACACTTTTA ATCCCAGCAG TGAGGCAGGC AGATACCTGT GAGGTCAAGG TCAGCCTACA
  Y
  ATCAAGTTGC AGGCCAGCCA GGGCTACATA GTAAAAGAAA GAGGAAGAAA ATTGAGATGC
  ATAGTGTTCT AGTTTGGCTT TCTGTTGCTT TGATAAAACA CTAATAAAAG CCAACACAGG
  GGGCTGGAGA GATGGCTCAG TGGTTAAAAA GCAATGGCTG CTCTTCTAGG GGACCCAAGT
  TCAATTCCCA GCACCTACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135542932	ENSMUSSNP2487427	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320850257	CHEV_3_100721399	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46122073					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100824792 () rs orientation: forward

Symbol	Name	Function Class
Rr581925	regulatory region 581925	259 bp distal
Rr581926	regulatory region 581926	518 bp distal