rs46123258 SNP Detail

Summary

• ID
  rs46123258
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135391609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTA CTAAGACTGA AATCGGAGTG
  C
  GTGGCGGTGT TAAAGAAGCA GAGAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145534639	ENSMUSSNP4427878	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss319990166	CHEV_1_137360448	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs46123258					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135391609 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419151	regulatory region 419151			1217 bp distal