rs46124206 SNP Detail

Summary

• ID
  rs46124206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47412496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTATTTC TGTATGAACA
  CCGTGGAGTA TCCTCACACA ACTTACACAC TTACATATTA CATGATGCTA ATGGTGTGTA
  TATTTACATG TTTATACATG CAGTCTATTG TTTTTAAGGC CACAGAAAAC AAAACACAAG
  GATAAAGCAT AGACAGATCA ACAGAATGGC GAATAGAAGG CGGGGGCTCT GCAGGTACAA
  Y
  GAGGCAGACT TCCAAAGTGA ATAGGCAGGA GTCCACCCTG AAACAACAGT CACGTTTAAC
  AGAGCCACTC TGGAGCACAG CGGCTTACTC TTAGTCAAGG GCTGGTGCTG CACGGAGTTT
  GCATGGCTAT GCTCCTAACC TACTGGGAGC ACAGGAGCTT AGCACACATT GGTAGTGGGC
  TCTCCTGATC GACAGGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62384180	NES17233458	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	C	C	C		C	C	C	T		T
ss324594786	CHEV_14_47794714	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46124206					SNP	T	T	T	T	C	T	C	C	C	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62384180	NES17233458	PERLEGEN	MM_PANEL	f	SNP	C/T
ss139400061	ENSMUSSNP6109880	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47412496 () rs orientation: forward

Symbol	Name	Function Class
Gch1	GTP cyclohydrolase 1	within coordinates
Tssr128307	transcription start site region 128307	609 bp downstream