rs46124271 SNP Detail

Summary

• ID
  rs46124271
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGATAAAG GCATGGACTT GCCCAGCCAA GCCTGATTTT
  TTTTTTTTTT TGTATGCATG GAGGCATCAG AATATTTTGT TTTAGATAAC CTAAGTCCCT
  G
  CTTCTGCTGG TGTGTCTCTG TACTCGCAGT GACCATGCCA GGCAAACGCA ATCCAAACCA
  CACGGTCCTA AGCCCCAGAC CTATGCTTGG CATAGCAGG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145548355	ENSMUSSNP5333157	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46124271					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777891 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	510 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	708 bp upstream
Tssr9020	transcription start site region 9020	1305 bp downstream
Tssr9021	transcription start site region 9021	1285 bp downstream
Tssr9022	transcription start site region 9022	797 bp downstream
Tssr9023	transcription start site region 9023	723 bp downstream
Tssr9024	transcription start site region 9024	687 bp downstream
Tssr9025	transcription start site region 9025	397 bp downstream
Tssr9026	transcription start site region 9026	199 bp downstream
Tssr9027	transcription start site region 9027	81 bp downstream
Tssr9028	transcription start site region 9028	43 bp downstream
Tssr9029	transcription start site region 9029	524 bp upstream
Tssr9030	transcription start site region 9030	559 bp upstream
Tssr9031	transcription start site region 9031	618 bp upstream
Tssr9032	transcription start site region 9032	1201 bp upstream
Tssr13894	transcription start site region 13894	1300 bp upstream
Tssr13895	transcription start site region 13895	1256 bp upstream
Tssr13896	transcription start site region 13896	729 bp upstream
Tssr13897	transcription start site region 13897	701 bp upstream
Tssr13898	transcription start site region 13898	584 bp downstream
Tssr13899	transcription start site region 13899	652 bp downstream
Tssr13900	transcription start site region 13900	662 bp downstream
Tssr13901	transcription start site region 13901	1223 bp downstream