rs46124728 SNP Detail

Summary

• ID
  rs46124728
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:48813782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGACGT CTTTAAAAGG
  TACCAATACA AACGAGAAAA AAACAAAAAA CAAAAAGGAA CGTTCCCTGA ATTCCCACAA
  TTTCAGAAGA ACTTAGTCAA ATGGGCATTT ACTCGATCCC ACAACCTAGC TTAAGCTCCT
  GAACCAGTTG CTGACTCACT TCGTTATTAG ATCCGTGCAC ATCATTACCT CCGATTAAAA
  W
  AATAATAATA ATAAAATTCT CAACGGTGCC TTTCTTTCTT TTTTTTTTTT TTTTTTTTTT
  TTTTTGACGC CACAGAAATG TGCAAAATAA TCACGCCAGA CAAGAACAGG CCCCTCAGCC
  TACAGACATC AAAGCTGACA AGAACGCGTC CGGGAGCGAC TCCGGGATGC TCTCTCTCTA
  TGGGGGGTTC TGACAAATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148115658	ENSMUSSNP4286242	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46124728					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48813782 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A			766 bp upstream
Cpgi8305	CpG island 8305			76 bp proximal
Dzip3	DAZ interacting protein 3, zinc finger			Intron
				Noncoding-Transcript-Variant
Rr391755	regulatory region 391755			within coordinates
Rr516661	regulatory region 516661			within coordinates
Rr516662	regulatory region 516662			512 bp proximal
Rr516663	regulatory region 516663			780 bp proximal
Rr516664	regulatory region 516664			1021 bp proximal
Tssr138707	transcription start site region 138707			778 bp upstream
Tssr141318	transcription start site region 141318			512 bp downstream
Tssr141319	transcription start site region 141319			662 bp downstream