rs46124742 SNP Detail

Summary

• ID
  rs46124742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62020882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTTGAG GCCAGTCAAG
  GCTACAAGTC TCTCTTGTCT GTCTGTCTGT CTGTCTCTCA ACAAAAAATG CTAAAAATGC
  CCATTGATTG GTAAATGCAT AAACTAACTA TGGTGTGTTC ATACAATGGA ACAGAATACA
  ACTTGGCCAC AGAAATGAAT GGCTTTCAAA ATAATTATGT TAAATGGTAG TAGCCAGAGC
  Y
  TTAAAGAGAT CTCGTGAGTC CTGTCTCATA AAGGCTTTAG AAAAGAGACT GATGAGCACG
  CAGAGACAGA AAGCAGCTGC GGGAGGGGGC TGCCTTGAGA GGCAGCAAGC AGTGCTGGGG
  AGAGTTAGGG TGAAGGACTG CAAAGATTAG GAGAAAAATC TTTAGGGCAA TCATATGCTT
  ATCATCTTAA ATTGCATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61279728	NES16893315	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46124742					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279728	NES16893315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62020882 () rs orientation: forward

Symbol	Name	Function Class
Rr215628	regulatory region 215628	1282 bp distal
Rr215629	regulatory region 215629	1519 bp proximal
Rr228219	regulatory region 228219	1228 bp distal
Rr228220	regulatory region 228220	1241 bp proximal
Rr401940	regulatory region 401940	1661 bp downstream
Tspan15	tetraspanin 15	293 bp downstream