rs46126628 SNP Detail

Summary

• ID
  rs46126628
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57312763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCATCCCT TCTTTACAGG ACAAATGGGC ATGACAGGAT
  AACCTCATTA AGGCACAAAC ACTGTAAAGG AGGCTAAGGC AGGGTAGTTA GCCTGAGCCA
  M
  ACCACATGCA ACAGAAAGAG AAAGAGGCAG GGCATACAGC CTGGGCCATT TCAAACCCCC
  AAATCTTGAA ACAATATAGG GTGAGCCCTG AGATGGACTC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62804054	NES17359582	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46126628					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62804054	NES17359582	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57312763 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f1	general transcription factor IIF, polypeptide 1	within coordinates
Rr529238	regulatory region 529238	1362 bp proximal
Rr529239	regulatory region 529239	1534 bp proximal
Tssr148848	transcription start site region 148848	1330 bp upstream
Tssr148849	transcription start site region 148849	1050 bp upstream
Tssr148850	transcription start site region 148850	935 bp upstream
Tssr148851	transcription start site region 148851	871 bp upstream
Tssr148852	transcription start site region 148852	294 bp upstream
Tssr148853	transcription start site region 148853	1300 bp downstream