rs46126985 SNP Detail

Summary

• ID
  rs46126985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28949076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGCACA TCCAGGCACG
  TGCACACAAA ACAAAACACC CACCTGTATA TTCCAAAAGT GAGCGCCCAC CTCTCAGCAG
  GAACAGGTGG CTACTTCAAG GATCAAGGTG GCCATGTGCC ACCTTGGATG CCTGCTTAAT
  GTCCATTTGC AGAAATGCCT GCACTGGTCA TGCAGGCTCC ACGCGTGTCA TTCCAGCACA
  Y
  ACTTGGTGCT TCCCATTACC TGAAAAACTT TATTTTTAAA TGTGTGTGTG TGTGTTTGTG
  GAGGCCTGCT GCTGTCTGTG GAAGCCATCC TTGGGTTTGA GCCACTAGAA CAACAAATAC
  CCCTAACCAC CTTCTAGCAC CTTACCTCTT TACAGTTTAA ATTCTTCCCT ATAATGATGT
  TTGCCTATGT ATGCACACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60986959	NES16139341	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46126985					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60986959	NES16139341	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28949076 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	1184 bp upstream
Cpgi18753	CpG island 18753	1465 bp distal
Gm73451	predicted gene, 73451	1466 bp downstream
Rr644525	regulatory region 644525	695 bp distal
Rr644526	regulatory region 644526	1172 bp proximal
Tssr65618	transcription start site region 65618	1981 bp downstream
Tssr71636	transcription start site region 71636	1906 bp upstream
Tssr71637	transcription start site region 71637	1712 bp upstream
Tssr71638	transcription start site region 71638	1679 bp upstream
Tssr71639	transcription start site region 71639	1227 bp upstream
Tssr71640	transcription start site region 71640	1183 bp upstream
Tssr71641	transcription start site region 71641	1118 bp upstream