rs46129221 SNP Detail

Summary

• ID
  rs46129221
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164945742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAGTTATC CTATTTGTGA AGGTAAAAGA GGAAAGTCCT
  TTGGGATACA TTTTTTCAGT GAATTGTTTC TTTGTTGATA CACAGTCTTA CCAGGCGGGC
  W
  GGCCTGGAAC TTTCTGGGTT TATGAACATG GCCTCCAGCT TGTGATGCTC CTCCTGCTCT
  GTCTCCTGAG TGCTGCACAC TGTGCCTAGT CTGGGTGCC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145994703	ENSMUSSNP1499309	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46129221					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164945742 () rs orientation: forward

Symbol	Name	Function Class
Gm70481	predicted gene, 70481	892 bp upstream
Rr422319	regulatory region 422319	886 bp proximal
Rr422320	regulatory region 422320	1099 bp proximal