rs46130574 SNP Detail

Summary

• ID
  rs46130574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:89602770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTATTA TAGGTGAAAC
  TCATGGTCTT CTAAAGGGTG TGCATGTTAA TTCTTATACA CATAGCGGTG ACTGCACTCC
  TGGCATTGTG CTTTGTAACC ATGACATTGC TATTGGTTTG CAAGGAGGCT AATGTTTCTT
  TTGATGACAG CAGTAACTAC TTTTCTGACT TGAGAGCTCG TTTGGAGAGA TTTTGTAAAG
  R
  AGAAGAAGAA GAGGAAATGT AGCTTTACCA TCTTTCATTT TTCTTTCCCA GTTTGGTGTT
  ATACTTAACA GAAACTTGGA TGCAAACCAG TTTAGTAGTC TATAAGAGCT TATTTCCTAT
  TGATAATTAT GTTCTTAGTA ACTGTAAAGC TGCAGCAATA GTTGGTTCCT CTTACTTACT
  TTGGTGTGGG AAGAGGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61194482	NES16707127	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46130574					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194482	NES16707127	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89602770 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	Intron
Rr614258	regulatory region 614258	706 bp proximal
Rr614259	regulatory region 614259	803 bp proximal