rs46133367 SNP Detail

Summary

• ID
  rs46133367
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176541770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCATTG TCTAGGAATA
  CTTTGGGTTT TTGCTCCCCC TGGTGTTAAT CAGTTTTCTG TTTCTATGAC AAAATGCCTG
  ATATAATCTA TTCAAGATAA ATAATTTTTT GTCTCTCAGT TTCCAGGGTT TAAACAAATG
  GTTGGTTTGG CTTTCCTGTT TCAGTGCAAG ACTGAAGCAA GGCAGGCACC ATGGGGGAGA
  W
  TGCATGAGGG AGCAATCTTG TGCAACATGT AGCGGGCCAC ACCAGGGTCT AAATAGCTTC
  AAGGACATAA TCCCAGCCAC CTAGCTTCCT TCTACTAAGG CCTATCTTCC ATTGGTTGTA
  ACACTTCCCA ATAGTGCCAC AGTGTATCCA CCATGGGCCT TTGAGTACAT TCAAATTCTA
  AAATATAATA CTTCTAACTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146339998	ENSMUSSNP5203970	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss320157477	CHEV_1_178644335	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46133367					SNP	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176541770 () rs orientation: forward

Symbol	Name	Function Class
Rr396622	regulatory region 396622	1338 bp downstream
Rr423899	regulatory region 423899	1321 bp distal
Rr423900	regulatory region 423900	1607 bp distal