rs46133510 SNP Detail

Summary

• ID
  rs46133510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48664251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAATCTCC TAATACCACC
  TTCTCCTAAC TCCAGTTTGT ACTGCCATGG AGCTGAGCTA TAGCTCCAGG TGTGCAGACT
  CCCCTTCCTG ATCTTCAATT CCCCAAGAAT GCTACAGAAA GACTTTTGGT TTCTGCCTTT
  CATATCACTT CTTCCCTTAT GCCAGCTCTT CCTGTCTCTC AAGTGTCTGG TAATAGATAC
  R
  GCCTTCATTT CTTTCCTAAT CTTTTGCCTT ATACTGTGGG CAGGCAAAGG CAGAACAGGG
  GTGAATTTGC TATTAATGAA ACACAGTGAA ACTCCATCTT CCAAATCTTT CAGTTTAAGT
  AACTTTTGCA TTTGGTTTGC TTGAAGAGAA CTGTGAAATT TGTATAGCTT TATACTCTGC
  AAAAGAGATC AACTCAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60458785	NES16437352	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46133510					SNP	G	G	G	G	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60458785	NES16437352	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48664251 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	within coordinates
Tssr138680	transcription start site region 138680	1401 bp downstream
Tssr138681	transcription start site region 138681	1308 bp downstream
Tssr138682	transcription start site region 138682	1257 bp downstream
Tssr138683	transcription start site region 138683	1227 bp downstream
Tssr138684	transcription start site region 138684	1193 bp downstream
Tssr138685	transcription start site region 138685	1152 bp downstream
Tssr138686	transcription start site region 138686	1033 bp downstream
Tssr138687	transcription start site region 138687	991 bp downstream
Tssr138688	transcription start site region 138688	293 bp downstream
Tssr138689	transcription start site region 138689	283 bp upstream
Tssr138690	transcription start site region 138690	341 bp upstream
Tssr138691	transcription start site region 138691	378 bp upstream