rs46134354 SNP Detail

Summary

• ID
  rs46134354
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121303194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AACCTGTTGC TTGCTGTTTC AGCTATTATT AGCCCAGCCA
  TCAAGCCTAA AGTTCCTAAC TCGTCTCTTC TCCCCACAAG GTGTCTATGT GGATGCTCGG
  C
  GTCTGACCTC AGGCACAGTA AGGGCAGCTC TCTTCCTAGC TTCTCTCTCT GCGGTGCTGT
  GGCAGCCTTT ACGACCTAAC TTAACGTTCT GACTAGCCAG C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147387193	ENSMUSSNP1338116	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46134354					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121303194 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12161	CpG island 12161	1240 bp proximal
Gm75774	predicted gene, 75774	1376 bp upstream
Mfap1b	microfibrillar-associated protein 1B	Intron
Rr563831	regulatory region 563831	195 bp proximal
Rr563832	regulatory region 563832	479 bp proximal
Rr563833	regulatory region 563833	1344 bp proximal
Rr563834	regulatory region 563834	1387 bp proximal
Tssr25938	transcription start site region 25938	1280 bp downstream
Tssr25939	transcription start site region 25939	1328 bp downstream