rs46135360 SNP Detail

Summary

• ID
  rs46135360
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89814948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTATAGTA GATACTTAAA
  TGAAAAAGCA GTTTCATACA GACAAGTTGC ATTCGATTTC ACAAAAGTGA AGAGAGGGTG
  AGTTAAGTTT TCATTTCTAA TTCAAATATC AAATGGTGTA AAACAGGAAT TTTTACCTTG
  TGAACTACAG AACTTTATTC AGTTTTACAA ACTTTATTTT GTTTGAAGAA ATGCCATATA
  W
  ACTTTCTGTA GTAAGATTTT TAAAAGTTAA ATTATCTTTA TAACAACTTT ATTGTTATAA
  TTCTCATGAT TAAAATTCAT TTTTTTAAAC TAAACACTTT TTAGTATGTT TACAAATTTA
  TGTGACATAA CCCTACTTAT GCTTTCATTT CCTATAATCT CTTCCTTTAG CCCCAATATC
  TGTCCTGTAC TCTACTCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ
ss61031651	NES16093363	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ
rs46135360					SNP	T	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031651	NES16093363	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89814948 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67722	transcription start site region 67722	1645 bp downstream
Tssr67723	transcription start site region 67723	192 bp downstream
Tssr67724	transcription start site region 67724	312 bp upstream
Tssr67725	transcription start site region 67725	357 bp upstream
Tssr67726	transcription start site region 67726	370 bp upstream
Tssr67727	transcription start site region 67727	434 bp upstream