rs46135766 SNP Detail

Summary

• ID
  rs46135766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69836088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACGAGA GCAGAGTGCA
  ACACTGGCTG TGTGGAGGAG AGTAGGCAGA GGACCCCAGC TGGGAACCGG CACAAACATT
  TGAGTTCACC CCTTCTGAGA GCATCATCCA CTCATACACT TGGCCAGGGT CTGGACAGAA
  CACCGAGGCC ACACTTTCTG AAGCACAGTT GATTCCCCAT GGGAGCCATC CATGGCCTGC
  Y
  TCATCCTGCA GTAGCAGCTG CATTGCCTCT GAGAAATTCA GAGAAGCCTC TTTCCAGAAT
  AAGAGGGAAC ACACTTTTGT CTTGTAATGA ACACCTTTGT CCAAGGACCT AAGCTTAGAT
  TCCAACACTC ACAATAAATG CTGCCCGAGG GCAGCTGTCC ACCTGCAATC CCAGTACTAG
  ATCCTGGAGA GCACTGGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss137860591	ENSMUSSNP199303	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C		C
ss324085692	CHEV_12_70890301	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46135766					SNP	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69836088 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	1030 bp upstream
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	1158 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	941 bp downstream
Tssr116528	transcription start site region 116528	960 bp downstream
Tssr116529	transcription start site region 116529	967 bp downstream
Tssr116530	transcription start site region 116530	1291 bp downstream
Tssr116531	transcription start site region 116531	1346 bp downstream
Tssr116532	transcription start site region 116532	1915 bp downstream
Tssr116533	transcription start site region 116533	1980 bp downstream
Tssr116534	transcription start site region 116534	1997 bp downstream