rs46136050 SNP Detail

Summary

• ID
  rs46136050
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:82905498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAGGTA GTTGAAAGAA
  AAAAAGGTAT TTGATTAATG AGCTCAGTTA CAGTTTAGAA CACTACCGGT GGGTGTGGTT
  CGAAGAGTGT GTACAGGAAG ATTCAACACC CAAAGCAGCA GAAATAAGGA ATTACTTCAA
  TGGACTTATT AAATTAATAA CAAAAAATAA TCCATGAACT TTAGGATAGC TGGAGAAAAG
  K
  GCACTATATC GCTCTAGAAG AGATAGTAGC CAAAATAATT GTGCAGGATA AACATATAAG
  AAGCCTAGAT TATATTGAAC CAAAGATCAC AGTACACAGA AAATAATCCC GTTATAGATC
  CTATTCAGTG TCATAAAATG AAAATGATTT TTGAAGACAT CAAGAAGGAA AGCACCTAAC
  TAACTTTATA CTGGAACCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61434204	NES16819558	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46136050					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61434204	NES16819558	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:82905498 () rs orientation: forward

Symbol	Name	Function Class
Gm39383	predicted gene, 39383	within coordinates
Gm57057	predicted gene, 57057	within coordinates
Rr401561	regulatory region 401561	177 bp upstream
Rr683838	regulatory region 683838	377 bp proximal
Rr683839	regulatory region 683839	536 bp proximal
Tssr90739	transcription start site region 90739	542 bp downstream