rs46138227 SNP Detail

Summary

• ID
  rs46138227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72020612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCG GCTCTTCTTC CACACCTTCA
  R
  CTTTCCCAGT CAGGAACGGT CTAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60631063	NES16276663	PERLEGEN	MM_PANEL2	f	SNP		G	G	A	G		A		G	G	G		G
ss145150804	ENSMUSSNP1893085	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G				A
ss322704856	CHEV_8_74091867	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs46138227					SNP	A	G	G	A	G	A	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60631063	NES16276663	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72020612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20548	CpG island 20548	1391 bp proximal
Nxnl1	nucleoredoxin-like 1	1367 bp upstream
Rr665115	regulatory region 665115	424 bp proximal
Slc27a1	solute carrier family 27 (fatty acid transporter), member 1	914 bp upstream
Tssr77870	transcription start site region 77870	898 bp upstream
Tssr77871	transcription start site region 77871	989 bp upstream
Tssr77872	transcription start site region 77872	1689 bp upstream
Tssr81733	transcription start site region 81733	1356 bp upstream
Tssr81734	transcription start site region 81734	1342 bp upstream
Tssr81735	transcription start site region 81735	1336 bp upstream
Tssr81736	transcription start site region 81736	1328 bp upstream
Tssr81737	transcription start site region 81737	1316 bp upstream
Tssr81738	transcription start site region 81738	1495 bp downstream