rs46138440 SNP Detail

Summary

• ID
  rs46138440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118531441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAAAACA TTAGGGTACC
  CCAGTGGTGT GCTCCCCCTG ACACCACCAG AAGGATGAAC AGGGAGTTGA CCAGGGGGTA
  ACTTTTTAAA TTGATGGTCC TTTTATAGAG CCATGCTGAG TGTCATTGGC AGCACATACA
  TCAGCCCACA TTGCAGCCTT TGTCATATTC TGAGTAACAT GACTCTTCCC TCCTCATCTG
  Y
  TGAATATATC TGACTGTCCC TGAGGACACA GTCTCGCCAT GGGCCAGCCC CAGTCATGGT
  CCCAGGCCCT AAGTAACCTC CCTCATGTTC CTGCCTTCTG GAAATGGTTC CCCACCAGAC
  TCCTGCTTTG GGATAGTCAG CTCAGAATAA ATACCTGGTA CATGGAACCA TGTTGGAATG
  GCTACCTGTG CTAGCTAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61229498	NES16855733	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46138440					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61229498	NES16855733	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118531441 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688309	regulatory region 688309	896 bp distal
Tssr87646	transcription start site region 87646	975 bp upstream
Tssr87647	transcription start site region 87647	1002 bp upstream
Tssr87648	transcription start site region 87648	1018 bp upstream
Tssr87649	transcription start site region 87649	1062 bp upstream
Tssr87650	transcription start site region 87650	1104 bp upstream
Tssr87651	transcription start site region 87651	1122 bp upstream
Tssr87652	transcription start site region 87652	1399 bp upstream
Tssr91958	transcription start site region 91958	504 bp upstream