rs46138645 SNP Detail

Summary

• ID
  rs46138645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78183541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCATTAG CTTGATAATT
  CAAGTTGCTT CACTCTCAAG ATTGAGAAGT TCCTTTGTTT TAAAAAGGTG GTGGTGGTGG
  GGAAACAGAG CCAGACAGTG AGGGCAAGGT GCTGCATGCC TTTAATCCCA CCACTCAGGA
  GGAAGAGGCA GGCAGATCTC TGAATTCCAG GACAGTTTGG CCTACACGAG AGAGTTCCAG
  R
  ATTACATGGG CTACACAGTG AAACCCTGTC TCCAACAACA ACAACAAAAG ATAGAAGTTG
  GATGTTGCCA TGTTAAATCA TGAAATCTCT TGGGATTAAT GAGTGTATGT GAATAGCATG
  TGAAGGACAT ATGAATAACA CCTCTTCTTG GAGAAGTTCT GGAGCCCTAG CCTGGTGGTA
  TATACACTGG GGAGGCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss144741467	ENSMUSSNP465645	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46138645					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78183541 () rs orientation: forward

Symbol	Name	Function Class
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	397 bp distal
Rr413697	regulatory region 413697	1249 bp proximal