rs46139063 SNP Detail

Summary

• ID
  rs46139063
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTGCAGA GACAGAGTTC
  TGTTTATCTT TGGGTATCTA TCTTCTTAGG AAACAAATAA CAACAGCCAG AGTCCTGGAG
  AGATGGCTCA GCAGTCAAGA GTACTTGTTC TTGCAGAAGA TCCAAGTTCC ATTCCCAGAA
  TCTACTCGGT GACGTATAAC ACTCATAACT CCAGTTCTAG GGGAGACAAT GCCCTCTTTT
  R
  ACTTCCTCAT GCACCAAATA CACAGGTATG CACAGACATA TATGGGAACA AAAGGTTCAT
  GCACATAAAT AAATCTAAAA AAAATTAAGG TTCAGCAAAC TAGCTAGCTT TTTGTTTCTG
  TTTCTGTTTG TTTGTTTTTC TGTTAGACAG GGTTTCTTTG TATAACAGAG CCCTGGCTGT
  CCTGGACTTG CTTTGTAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647276	ENSMUSSNP7170525	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss322398757	CHEV_7_117910488	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46139063					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366181 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1232 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	1109 bp proximal
Rr653308	regulatory region 653308	819 bp proximal
Rr653309	regulatory region 653309	1447 bp proximal
Rr653310	regulatory region 653310	1948 bp proximal
Tssr68503	transcription start site region 68503	1089 bp upstream
Tssr68504	transcription start site region 68504	1132 bp upstream
Tssr68505	transcription start site region 68505	1164 bp upstream
Tssr68506	transcription start site region 68506	1195 bp upstream
Tssr68507	transcription start site region 68507	1641 bp upstream
Tssr68508	transcription start site region 68508	1856 bp upstream