rs46139245 SNP Detail

Summary

• ID
  rs46139245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100596451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACGCCAGA TCTCATTACG GATGGTTGTG AGCCACCATG
  TGGTTGCTGG GAATTGAACT CAGGACCTTG GGAAGAGCAG TCAGTGCTCT TAACCAATGA
  R
  CCATCTCTCC AGCCCTGAAG TAATGTTTTT TAACACCACT TTCCTAAGCA AGATGTGTAC
  ACATGAAAAA GATCATTTTC AAATGCACAC TGCCCTAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145089829	ENSMUSSNP6010373	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324506668	CHEV_13_101229898	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46139245					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100596451 () rs orientation: forward

Symbol	Name	Function Class
Gtf2h2	general transcription factor II H, polypeptide 2	275 bp downstream