rs46139742 SNP Detail

Summary

• ID
  rs46139742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79211226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TAAATAAACT GGGGACTCTC TACAGTGAAA ACCTAGCCCC
  AAAGGTATTA GCATGACCCT GGCAAAGGAG GTCACTGGCC TCCCTTCCCC AGGCTAAGCA
  R
  GAACAGCGGG CGGGCGCTAG CTACATCAAT ATTTGCTCAG TGGAAAGGGA GCAGAGAATA
  AAGGTAACAG AAATAAAAGC GCCTGGTTGT CAGGGTGATT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148197494	ENSMUSSNP1280676	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46139742					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79211226 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	601 bp upstream
Cpgi7329	CpG island 7329	773 bp proximal
Pla2g6	phospholipase A2, group VI	within coordinates
Rr404497	regulatory region 404497	1195 bp upstream
Rr505593	regulatory region 505593	within coordinates
Rr505594	regulatory region 505594	694 bp proximal
Rr505595	regulatory region 505595	928 bp proximal
Tssr132082	transcription start site region 132082	557 bp upstream
Tssr135328	transcription start site region 135328	1100 bp downstream
Tssr135329	transcription start site region 135329	1128 bp downstream
Tssr135330	transcription start site region 135330	1175 bp downstream