rs46140693 SNP Detail

Summary

• ID
  rs46140693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:34724384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCCGCA GCGAAGCGGT
  CCGACCGAAG ACTACACCGA CCCGGAAGGC GGCTCCAGAG AACTCAGGTT CCTGAGAACA
  GGCGTTCCTC CCACCTCCTC CCGGTTCACC CTTCCCGACG CTCGCCCTTA CCTCTCTCCT
  CACGCTTCCT GGCTGCTGCA ACCGGAGGCC TGTCCGGAGA GCACTGGACT CCCAGATTCG
  Y
  GACACTAACT CCACCTCAGC ACAGAAATAA CTCCCTCTTC ACTCGGCAGC AGCACTGCTA
  AGTAAGCGCC GGGGATTTTT GAATACGGTT CCCGCGAGAA CTCACGTTTC TCACGAGATG
  TCTTGTCCAA TCCGCGCCTC CGGGGCAAAC GAGTGGGGCG CCTTGCAGAG ACTGCGCATG
  TGCATGCTCC GCGACTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63335211	NES17512768	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46140693					SNP	T	T	T	T	T	T	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63335211	NES17512768	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34724384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	within coordinates
Gm57348	predicted gene, 57348	125 bp upstream
Rr402479	regulatory region 402479	within coordinates
Rr444978	regulatory region 444978	within coordinates
Rr444979	regulatory region 444979	74 bp proximal
Rr444980	regulatory region 444980	158 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	mRNA-UTR
Tssr100930	transcription start site region 100930	162 bp upstream
Tssr100931	transcription start site region 100931	229 bp upstream
Tssr107398	transcription start site region 107398	27 bp downstream
Tssr107399	transcription start site region 107399	46 bp downstream
Tssr107400	transcription start site region 107400	74 bp downstream