rs46141640 SNP Detail

Summary

• ID
  rs46141640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151995701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACACACAC ACACACACAC
  ACACACACAC ACACACACAC TCACACACAC ACACACATGC ACATTAATAA AAATAGATCT
  TTAAAAATTT TTTTAAAAAT CTAAGGTAAA TTTGATGTAG CTTTCAAACA TAAGAAAGTA
  ATTGTTTTCT TTATAATTTT GTATTTGGCT TTGTACCTCT GGCTGGCCTC GAGCTCCCTG
  R
  ATAGAGTAGG CTGGCCTTGA GCTCAGCGAG AGCTGGGACA GAAGGCAGGG CAGATGGCTG
  GCTTTACTAT TAGCCACCTT GTTTCATTTT AGGAAAGGAG TACTTTTTAC CCCAGATGCA
  AATCTGAAAC AAGTAATGAG GAGCCTCGTT TCAAGCAGCT CTGTCCACAC TTGCAGCATC
  ACAGCATTCT GTCTAGACGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136101783	ENSMUSSNP5012069	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46141640					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151995701 () rs orientation: forward

Symbol	Name	Function Class
Miga1	mitoguardin 1	within coordinates
Rr587516	regulatory region 587516	1022 bp distal
Tssr32405	transcription start site region 32405	262 bp upstream