rs46143672 SNP Detail

Summary

• ID
  rs46143672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC CAATTTTACA AGTAGGAACC
  Y
  GCAGTGTCTT GTCTCCTGGT AGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135158410	ENSMUSSNP1728577	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320757161	CHEV_3_50170831	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46143672					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321358 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11			Intron
				mRNA-UTR
Tssr33101	transcription start site region 33101			479 bp upstream
Tssr33102	transcription start site region 33102			456 bp upstream
Tssr33103	transcription start site region 33103			382 bp upstream
Tssr33104	transcription start site region 33104			368 bp upstream
Tssr33105	transcription start site region 33105			284 bp upstream
Tssr33106	transcription start site region 33106			263 bp upstream
Tssr33107	transcription start site region 33107			238 bp upstream
Tssr33108	transcription start site region 33108			168 bp upstream
Tssr33109	transcription start site region 33109			110 bp upstream
Tssr33110	transcription start site region 33110			43 bp upstream
Tssr33111	transcription start site region 33111			21 bp upstream
Tssr33112	transcription start site region 33112			5 bp downstream
Tssr33113	transcription start site region 33113			51 bp downstream
Tssr33114	transcription start site region 33114			75 bp downstream
Tssr33115	transcription start site region 33115			134 bp downstream
Tssr33116	transcription start site region 33116			539 bp downstream
Tssr33117	transcription start site region 33117			769 bp downstream
Tssr33118	transcription start site region 33118			796 bp downstream
Tssr33119	transcription start site region 33119			822 bp downstream
Tssr33120	transcription start site region 33120			1372 bp downstream
Tssr33121	transcription start site region 33121			1665 bp downstream
Tssr33122	transcription start site region 33122			1759 bp downstream