rs46143719 SNP Detail

Summary

• ID
  rs46143719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67146329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAG GTGGCCCACC GGACCTGGGA
  Y
  TTACAACTGG GGAAAGGGGG GCACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132326659	ENSMUSSNP965051	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss323719241	CHEV_11_67069005	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46143719					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67146329 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	760 bp downstream
Tssr3529	transcription start site region 3529	704 bp downstream
Tssr102201	transcription start site region 102201	1985 bp downstream
Tssr102202	transcription start site region 102202	1496 bp downstream
Tssr102203	transcription start site region 102203	1433 bp downstream
Tssr102204	transcription start site region 102204	1037 bp downstream
Tssr102205	transcription start site region 102205	820 bp downstream
Tssr102206	transcription start site region 102206	716 bp downstream
Tssr102207	transcription start site region 102207	63 bp downstream
Tssr102208	transcription start site region 102208	88 bp upstream
Tssr102209	transcription start site region 102209	123 bp upstream
Tssr102210	transcription start site region 102210	141 bp upstream
Tssr102211	transcription start site region 102211	151 bp upstream
Tssr102212	transcription start site region 102212	173 bp upstream
Tssr102213	transcription start site region 102213	325 bp upstream
Tssr102214	transcription start site region 102214	681 bp upstream
Tssr102215	transcription start site region 102215	695 bp upstream
Tssr102216	transcription start site region 102216	739 bp upstream
Tssr102217	transcription start site region 102217	893 bp upstream
Tssr102218	transcription start site region 102218	1604 bp upstream
Tssr102219	transcription start site region 102219	1691 bp upstream
Tssr102220	transcription start site region 102220	1730 bp upstream
Tssr108536	transcription start site region 108536	1449 bp upstream
Tssr108537	transcription start site region 108537	1428 bp upstream
Tssr108538	transcription start site region 108538	918 bp upstream
Tssr108539	transcription start site region 108539	720 bp upstream
Tssr108540	transcription start site region 108540	662 bp upstream
Tssr108541	transcription start site region 108541	20 bp upstream
Tssr108542	transcription start site region 108542	93 bp downstream
Tssr108543	transcription start site region 108543	208 bp downstream
Tssr108544	transcription start site region 108544	791 bp downstream
Tssr108545	transcription start site region 108545	1723 bp downstream