rs46143777 SNP Detail

Summary

• ID
  rs46143777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:154034646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCTGGGCC TTCCCTGGGC TGCTGGCGAG TCCTGCACTG
  GAGCAGAGTG GAAGAAGCCA CCCTGAGAGG CTATCTCTGC CACAGCCAAG CAGGGGGAGA
  Y
  GAGGCTAACC GCAGAGCACT TCTCAATTTG AGACACTCAT CTGCTCAGAA GCACCCTCAT
  TTCAGAGATC CCCTTGGCCC CTAACACACA CAGACGCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148023948	ENSMUSSNP1661340	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46143777					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154034646 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	Intron
Rr567774	regulatory region 567774	1898 bp distal
Rr567775	regulatory region 567775	1692 bp distal
Rr567776	regulatory region 567776	1650 bp distal
Rr567777	regulatory region 567777	93 bp distal
Rr567778	regulatory region 567778	1021 bp proximal
Tssr20971	transcription start site region 20971	1967 bp downstream
Tssr20972	transcription start site region 20972	1958 bp downstream
Tssr20973	transcription start site region 20973	1944 bp downstream
Tssr20974	transcription start site region 20974	1894 bp downstream
Tssr20975	transcription start site region 20975	1869 bp downstream
Tssr20976	transcription start site region 20976	1453 bp downstream
Tssr20977	transcription start site region 20977	629 bp upstream