rs46144299 SNP Detail

Summary

• ID
  rs46144299
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:72799306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT GGCTCTCCCT GAAGAGAAAG
  K
  GCTGCCCTGG TAAGTCACTT CCTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148626614	ENSMUSSNP4679690	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46144299					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72799306 () rs orientation: forward

Symbol	Name	Function Class
4933408M05Rik	RIKEN cDNA 4933408M05 gene	325 bp downstream
Cnga1	cyclic nucleotide gated channel alpha 1	Intron
Tssr51320	transcription start site region 51320	762 bp downstream
Tssr51321	transcription start site region 51321	795 bp downstream