rs46144666 SNP Detail

Summary

• ID
  rs46144666
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70167774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAATGGTTA AGAACACAGA TGCTGGTCTG GAGAGATGGC
  TCAGCGGTTA AGAGCACTGA CTGCTCTTCC AGAGGTCCTG AGTTCAAATC CCAACAACTA
  M
  ATGGTGGCTC ACAGTCATCT ATAATGGGAT CTGATACACC TCTACTGGTG TGTTTAAAGA
  CAGTGTACTA TATACATAAA ATAAAAAAAT AAATAAATC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145111230	ENSMUSSNP3498630	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss322696630	CHEV_8_72239023	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46144666					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70167774 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm64048	predicted gene, 64048			1434 bp upstream
Rr400882	regulatory region 400882			1216 bp upstream
Rr400883	regulatory region 400883			1741 bp upstream
Rr664553	regulatory region 664553			944 bp proximal
Rr664554	regulatory region 664554			1445 bp proximal
Rr664555	regulatory region 664555			1690 bp proximal
Tssr77669	transcription start site region 77669			1456 bp upstream
Tssr81531	transcription start site region 81531			1291 bp downstream
Tssr81532	transcription start site region 81532			1313 bp downstream
Tssr81533	transcription start site region 81533			1703 bp downstream
Tssr81534	transcription start site region 81534			1726 bp downstream
Zfp869	zinc finger protein 869			Intron
				Noncoding-Transcript-Variant