rs46145733 SNP Detail

Summary

• ID
  rs46145733
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47888054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAA TAAGCCTCTT TCCCATTCCA
  T
  CTTTCTTTTA GAGACCTTAC ACGAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139408817	ENSMUSSNP2816160	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324597846	CHEV_14_48270272	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46145733					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47888054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6388	CpG island 6388	438 bp distal
Ktn1	kinectin 1	within coordinates
Rr297095	regulatory region 297095	within coordinates
Tssr125323	transcription start site region 125323	1477 bp downstream
Tssr125324	transcription start site region 125324	1208 bp downstream
Tssr125325	transcription start site region 125325	208 bp downstream
Tssr128337	transcription start site region 128337	1333 bp upstream