rs46145935 SNP Detail

Summary

• ID
  rs46145935
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49593636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGTCTC TGTGAGTGTG
  TCTTTCTGTG TGTCTCTCTG TCTGCCTCTT GTGCCCCCTC TATTCTCTCT CCCTCTCTCC
  CTCTCTTCCT CTCTTCCTCT CTTTCAATGG CACAGTGAGG CTTTATCTAG GATCCCTTCT
  TCCTCATTAT CATACCCAGT CATATCCAAG ACTCAGACAA GAGAACAACC ACAGATCTCT
  R
  AAACAAAGTA CAATTTTTTT TTTTTGGTAT AAGTTGTTTT TCTCAGGTAC TTCTTAAAAA
  ATATAATCAT GAAAAGCTGA CTGACACATC TATGGTGTCA CGTTTTATTG TGTAACTAAA
  GGGGTGTTAT TTCCATTCAC ACATATGAAA ATGAGATCCA GAGTAGCTAA AACAAAGGAT
  GTAAGCCCAT CATGTCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460792	NES16446246	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46145935					SNP	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460792	NES16446246	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49593636 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Gm60046	predicted gene, 60046	560 bp upstream
Rr404848	regulatory region 404848	698 bp upstream
Rr516712	regulatory region 516712	966 bp distal
Rr516713	regulatory region 516713	within coordinates
Rr516714	regulatory region 516714	455 bp proximal
Rr516715	regulatory region 516715	571 bp proximal
Rr516716	regulatory region 516716	1914 bp proximal
Tssr4897	transcription start site region 4897	1963 bp upstream
Tssr138714	transcription start site region 138714	433 bp downstream
Tssr141333	transcription start site region 141333	1579 bp upstream
Tssr141334	transcription start site region 141334	1425 bp upstream
Tssr141335	transcription start site region 141335	488 bp upstream