rs46146226 SNP Detail

Summary

• ID
  rs46146226
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164721879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CGCTGGGCTT GCGGGAGGGG CAGGCGGGAG CGCGCTGGGA
  GCGGGGTGGG GGAGGGTTCC CGTCTGTGCG CCTGCGTGGC TCCGCCCACC AGAGCCGGGG
  M
  GTTATGATTG GTACTCTGGT ATGTGATCCC GCCCATGTTC CTCCAATCCC GGAATCGGAT
  GCATTTTCTA GTCCGAGTTC CGCTGCTTGC GCAGATACAG T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148232711	ENSMUSSNP1411588	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46146226					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164721879 () rs orientation: forward

Symbol	Name	Function Class
4930445K14Rik	RIKEN cDNA 4930445K14 gene	within coordinates
Cpgi12676	CpG island 12676	within coordinates
Gm75548	predicted gene, 75548	160 bp upstream
Pcif1	phosphorylated CTD interacting factor 1	Intron
Rr397480	regulatory region 397480	448 bp downstream
Rr397481	regulatory region 397481	within coordinates
Rr569749	regulatory region 569749	1340 bp distal
Rr569750	regulatory region 569750	1275 bp distal
Rr569751	regulatory region 569751	592 bp distal
Rr569752	regulatory region 569752	171 bp distal
Rr569753	regulatory region 569753	556 bp distal
Rr569754	regulatory region 569754	within coordinates
Tssr21683	transcription start site region 21683	561 bp downstream
Tssr21684	transcription start site region 21684	57 bp upstream
Tssr21685	transcription start site region 21685	86 bp upstream
Tssr27592	transcription start site region 27592	155 bp upstream