rs46150149 SNP Detail

Summary

• ID
  rs46150149
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:158267597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG GACTACCTTG CTTGCCCCTT
  T
  TGACCTCTAC TTGGACTCCC TGCAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136136857	ENSMUSSNP5037065	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321035052	CHEV_3_158224924	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs46150149					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:158267597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13981	CpG island 13981	within coordinates
Lrrc7	leucine rich repeat containing 7	within coordinates
Rr588113	regulatory region 588113	164 bp proximal
Tssr36312	transcription start site region 36312	613 bp upstream
Tssr36313	transcription start site region 36313	538 bp upstream
Tssr36314	transcription start site region 36314	410 bp upstream
Tssr36315	transcription start site region 36315	368 bp upstream
Tssr36316	transcription start site region 36316	162 bp upstream
Tssr36317	transcription start site region 36317	239 bp downstream