rs46150343 SNP Detail

Summary

• ID
  rs46150343
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52122535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT TTGTGGAATA GCCTAAGCTG
  K
  GTGTGACCAT GTTTCCACTC CCCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148144125	ENSMUSSNP3379024	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs46150343					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52122535 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Rr327240	regulatory region 327240	321 bp proximal
Rr328951	regulatory region 328951	within coordinates
Tssr141422	transcription start site region 141422	788 bp upstream
Tssr141423	transcription start site region 141423	752 bp upstream
Tssr141424	transcription start site region 141424	405 bp upstream
Tssr141425	transcription start site region 141425	1934 bp downstream