rs46151477 SNP Detail

Summary

• ID
  rs46151477
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84440312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATAAAGG GCTAGTGAGA
  TGGTGCTGCT GCCCAGCCTT AATGACATGC GTGTGCTCTT CAGGGCTCGC TGATCTCCAT
  TGCACAGATA CAAACACGCC AACAGAGCAG TGTACAAAGT AAGACATTCC CACTCGTCCC
  ACCATGCTCC CCACATGATG ATAAGGGACT GAGTCTCTGG AAATGTGAGC AAGCCCCCAA
  M
  TAGATGCTTT CTTTTATGAG TTGCCATGGT CATAACTAAG AGTGGTTTCA GCTCTGCAGG
  GATGGAATCT AGATGTGTGG GCAGTTTGTT TGTTCATTTT GTGTTTGTGT TTTGAAACAG
  AGTCTCTCTT TGTAGCCCTG GCTATCCTGG ACTTTACTGT ATAGACAAGG CTGGCCTTGG
  ACTCAAAGAA TTCTGCCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145360605	ENSMUSSNP3225597	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A		A
ss322745593	CHEV_8_86237582	CHEVERUD	SCREENING_POP	f	SNP				A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46151477					SNP	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84440312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20654	CpG island 20654	1227 bp proximal
Ddx39a	DEAD box helicase 39a	1494 bp upstream
Rr382392	regulatory region 382392	within coordinates
Rr401010	regulatory region 401010	1291 bp upstream
Rr666291	regulatory region 666291	844 bp proximal
Rr666292	regulatory region 666292	1004 bp proximal
Rr666293	regulatory region 666293	1876 bp proximal
Tssr78284	transcription start site region 78284	1508 bp upstream
Tssr78285	transcription start site region 78285	1544 bp upstream
Tssr78286	transcription start site region 78286	1556 bp upstream
Tssr78287	transcription start site region 78287	1622 bp upstream
Tssr78288	transcription start site region 78288	1821 bp upstream