rs46151478 SNP Detail

Summary

• ID
  rs46151478
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGCATG CAGAGTGTGG
  CAGATGGCCT GACATGGGGA GATCTGAGAA TATCTTTTCC CGTTTCAGAA TGGAATGTGC
  AGAAAGAAAA AAGCCAGCTT ACCTGAGGAG ACGGTGACCG TGGTCCCTGT GCCCCAGACA
  TCGAAGTACC AGTAGCACAG TCTCTGTTCT GCCTCTGTTC CTATACTAAA ACTCTCTCCA
  T
  ATCCTGCCTT AGGCCACCTG AACCCCACAG TCCCCAGATG CAGGACTCAC CTGACCTGAG
  TGACCTGAGC CCCCTGGTCC TAGACATCAG AGTAATTATA GACCCAGTGA AGTAGCCCTT
  CATCTGGGGC CAACCAAACC CATCCCAAAG TCCCTTGGCG TCCCCAGTGG CATCCAAGCC
  TCAGAAACTC AGATGTTTGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss138742391	ENSMUSSNP3314311	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs46151478					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393499 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	649 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	46 bp upstream
Ighj2	immunoglobulin heavy joining 2	364 bp upstream
Ighj3	immunoglobulin heavy joining 3	747 bp upstream
Ighj4	immunoglobulin heavy joining 4	1312 bp upstream
Rr554	regulatory region 554	1907 bp distal
Tssr115504	transcription start site region 115504	348 bp upstream
Tssr118005	transcription start site region 118005	1332 bp upstream
Tssr118006	transcription start site region 118006	1301 bp upstream
Tssr118007	transcription start site region 118007	1255 bp upstream
Tssr118008	transcription start site region 118008	1228 bp upstream
Tssr118009	transcription start site region 118009	1217 bp upstream
Tssr118010	transcription start site region 118010	1079 bp upstream
Tssr118011	transcription start site region 118011	981 bp upstream
Tssr118012	transcription start site region 118012	746 bp upstream
Tssr118013	transcription start site region 118013	731 bp upstream
Tssr118014	transcription start site region 118014	627 bp upstream
Tssr118015	transcription start site region 118015	531 bp upstream
Tssr118016	transcription start site region 118016	377 bp upstream
Tssr118017	transcription start site region 118017	37 bp upstream
Tssr118018	transcription start site region 118018	497 bp downstream
Tssr118019	transcription start site region 118019	514 bp downstream
Tssr118020	transcription start site region 118020	570 bp downstream
Tssr118021	transcription start site region 118021	710 bp downstream
Tssr118022	transcription start site region 118022	742 bp downstream
Tssr118023	transcription start site region 118023	907 bp downstream